VCF-kit
About
The Variant Call Format Kit
is a collection of tools useful for performing a variety of analyses and operations on variant data stored using the Variant Call Format. VCF-kit is open source and community contributions are encouraged.
VCF-kit is open source and is licensed under the MIT License. We welcome community contributions.
Installation
VCF-kit can be installed using pip
:
pip install numpy # You may need to install numpy independently.
pip install VCF-kit
Installing Dependencies:
vk setup
vk setup
uses homebrew (or if on linux, linux-brew) to install programs used by VCF-kit:
- bwa
- samtools
- bcftools
- blast
- muscle